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In Stock | Lighting Up the RNA World with "Click" Chemistry — 5-Ethynyl-UTP: A New Solution for Nascent RNA Labeling

2025/10/22 17:13:06 Browse volume(17)


Nucleoside Raw Materials

5-Ethynyl-UTP


I. Product Overview

1004955-96-7 Structural Formula

Chinese Name: 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate)

English Name: 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate)

Abbreviation: 5-Ethynyl-UTP

CAS Number: 1004955-96-7

Molecular Formula: C11H15N2O15P3

Molecular Weight: 508.16

Specification: 25 ul / 100 ul / 1000 ul (Custom packaging supported)

Form: Aqueous solution

Item Number: G09010023

Concentration: ~100 mM in water

Transport: Low temperature transport

5-Ethynyl-UTP, 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate) is a chemically modified nucleoside triphosphate that can be directly incorporated into RNA molecules, and is a core raw material for nascent RNA labeling, detection, and enrichment.



II. Core Advantages

High Sensitivity: Click chemistry reaction efficiency is extremely high, with clear signals and low background noise.

High Specificity: Ethynyl and azide groups are almost absent in biological systems, resulting in extremely low reaction background.

Good Biocompatibility: Reaction conditions are mild, causing minimal damage to RNA.

Versatility: By replacing different azide reporter molecules, various purposes such as detection (fluorescence) and enrichment (biotin) can be achieved.

Safety: No need to use radioactive labels, making operations simpler and safer.

One click, instantly illuminates the RNA synthesis process.



III. Working Principle

Principle: 5-Ethynyl-UTP can be directly incorporated by RNA polymerase into nascent RNA chains, replacing part of the natural UTP.

Detection Method: After incorporation, using its terminal alkyne group (–C≡CH), it can react with azide-labeled fluorescent dyes or biotin via click chemistry, enabling RNA visualization or enrichment.

Typical Reaction System: Cu(I)-catalyzed azide-alkyne cycloaddition (CuAAC).

Detection Forms:

  • Fluorescence microscopy observation (e.g., EU-Click staining);

  • Flow cytometry (detecting RNA synthesis activity);

  • RNA pull-down / RNA-seq analysis (EU-RNA enrichment followed by sequencing);



IV. Application Scenarios

1. RNA Synthesis Rate Detection: Monitor changes in RNA transcription rates under different conditions (drug treatment, stress, differentiation).

2. Transcriptional Regulation Verification: Used in combination with transcriptional inhibitors (e.g., actinomycin D) to determine if RNA synthesis is blocked.

3. RNA Capture and Sequencing (EU-seq): Label and biotinylate nascent RNA, then enrich with streptavidin magnetic beads for sequencing.



V. Marker Comparison

5-Ethynyl-UTP Related Marker Comparison Table.jpg



VI. Experimental Operation Points

  • In vitro transcription system: 5-Ethynyl-UTP can directly replace a portion of UTP (typically 5–20% replacement ratio).

  • Intracellular labeling: Commonly used 5-Ethynyl-uridine (EU) enters cells and is phosphorylated in vivo to 5-Ethynyl-UTP.

  • Detection chemical reagents: Recommended to pair with Alexa Fluor 488-azide (fluorescence) or biotin-azide (enrichment).




Extended Services

Making RNA visualization no longer complicated—5-Ethynyl-UTP accurately reveals the dynamic blueprint of gene expression for you.

For high-quality nucleoside raw materials or custom packaging services, please call +86 13302967066!

Shenzhen GeneSeqTools Bioscience & Technology Co. Ltd. is committed to providing reliable domestic alternative solutions for gene sequencing, molecular diagnosis, and microbial detection.

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In Vitro Molecular Diagnosis | Gene Sequencing | Microbial Detection
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Shenzhen GeneSeqTools Bioscience & Technology Co. Ltd.

Founded in 2015, it is a high-tech enterprise focusing on microbial testing gene sequencing and in vitro molecular diagnostics in the R&D, production, and sales of biochemical reagent raw materials. Committed to providing high-quality biochemical reagent raw materials and professional custom synthesis services, the product portfolio covers more than a dozen categories and nearly a thousand innovative products. Upholding the core philosophy of “customer first, integrity and professionalism”, we serve with dedication to meet customers’ diverse needs in research and testing.

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